GL1X · GenesisL1 explorer

MolNFT v1 · #80924 · DNA

The absence of tertiary interactions in a self-assembled DNA crystal structure

3UBI · DNA (5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*CP*GP*TP*AP*CP*TP*CP*G)…: “The absence of tertiary interactions in a self-assembled DNA crystal structure”. X-ray diffraction, 2 pockets (best druggability 0.37). MolNFT v1 #80924 on GenesisL1: 3D…

PDB
3UBI
Type
DNA
Length
62 nucleotides
Chains
4
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
DNA (5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*CP*GP*TP*AP*CP*TP*CP*G)- 3'); DNA (5'…
Pockets
2 · best druggability 0.37

Structure

x-ray diffraction · 4 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
ADNA (5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*CP*GP*TP*AP*CP*TP*CP*G)- 3')dna16——
DDNA (5'- D(P*CP*CP*GP*AP*GP*TP*AP*CP*GP*AP*CP*GP*AP*CP*AP*AP*G)-3')dna17——
BDNA (5'-D(*TP*CP*TP*GP*AP*TP*GP*AP*GP*GP*CP*TP*GP*C)-3')dna14——
CDNA (5'-D(P*GP*CP*TP*TP*GP*TP*CP*GP*TP*TP*CP*AP*TP*CP*A)- 3')dna15——

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
11550.370.7218empty
2710.260.7210empty

Interfaces

6 interfaces between chains.

  • A–D · 397 Ų buried · 17 hydrogen bonds · nucleic-nucleic
  • D–C · 356 Ų buried · 18 hydrogen bonds · nucleic-nucleic
  • A–B · 321 Ų buried · 22 hydrogen bonds · nucleic-nucleic
  • B–C · 271 Ų buried · 6 hydrogen bonds · nucleic-nucleic
  • D–B · 263 Ų buried · 3 hydrogen bonds · nucleic-nucleic

Compared structures

  • 3UBI · The Absence of Tertiary Interactions in a Self-Assembled DNA Crystal Structure · the same entry in another collection · chain C against C, TM-score 1.00

Analyse

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.