MolNFT v1 · #80769 · protein + DNA
Crystal structure of ALBA2-DNA complex
3U6Y · DNA/RNA-binding protein alba 2: “Crystal structure of ALBA2-DNA complex”. X-ray diffraction, 1 ligand (PO4). MolNFT v1 #80769 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3U6Y
- Type
- protein + DNA
- Length
- 208 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA/RNA-binding protein alba 2; DNA (5'-D(*CP*CP*GP*GP*C)-3'); DNA…
- UniProt
- Q9YAX2
- Ligands
- PO4
Structure
x-ray diffraction · 3 distinct chains · 27% helix, 35% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C | DNA/RNA-binding protein alba 2 | protein | 99 | 27% helix, 35% strand | Q9YAX2 |
| D | DNA (5'-D(*CP*CP*GP*GP*C)-3') | dna | 5 | — | — |
| E | DNA (5'-D(*GP*GP*CP*CP*G)-3') | dna | 5 | — | — |
Ligands and binding sites
- PO4 · Phosphate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
4 interfaces between chains.
- A–C · 816 Ų buried · 13 hydrogen bonds · protein-protein
- D–E · 224 Ų buried · 20 hydrogen bonds · nucleic-nucleic
- C–D · 45 Ų buried · 0 hydrogen bonds · protein-nucleic
- C–E · 25 Ų buried · 0 hydrogen bonds · protein-nucleic
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9YAX2
- Elsewhere: RCSB PDB 3U6Y · PDBe 3U6Y · UniProt Q9YAX2
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.