MolNFT v1 · #80729 · protein
Crystal structure of a hypothetical protein SMC02350 from sinorhizobium meliloti 1021
3U5R · Uncharacterized protein: “Crystal structure of a hypothetical protein SMC02350 from sinorhizobium meliloti 1021”. X-ray diffraction, 4 pockets (best druggability 0.57). MolNFT v1 #80729 on GenesisL1: 3D structure, binding sites and…
- PDB
- 3U5R
- Type
- protein
- Length
- 745 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein
- UniProt
- Q92MN6
- Pockets
- 4 · best druggability 0.57
Structure
x-ray diffraction · 3 distinct chains · 28% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| E | Uncharacterized protein | protein | 183 | 27% helix, 22% strand | Q92MN6 |
| F, G | Uncharacterized protein | protein | 189 | 28% helix, 21% strand | Q92MN6 |
| H | Uncharacterized protein | protein | 184 | 29% helix, 22% strand | Q92MN6 |
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 358 | 0.57 | 0.76 | 44 | empty |
| 2 | 216 | 0.53 | 0.77 | 33 | empty |
| 3 | 119 | 0.43 | 0.77 | 24 | empty |
| 4 | 61 | 0.30 | 0.75 | 13 | empty |
Interfaces
4 interfaces between chains.
- E–H · 319 Ų buried · 0 hydrogen bonds · protein-protein
- E–F · 178 Ų buried · 0 hydrogen bonds · protein-protein
- F–G · 22 Ų buried · 0 hydrogen bonds · protein-protein
- G–H · 12 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 3U5R · Crystal structure of a hypothetical protein SMc02350 from Sinorhizobium meliloti 1021 · the same entry in another collection · chain E against E, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q92MN6
- Elsewhere: RCSB PDB 3U5R · PDBe 3U5R · UniProt Q92MN6
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