MolNFT v1 · #80710 · protein
The crystal structure of a functionally unknown protein (DTOX_1751) from desulfotomaculum acetoxidans dsm 771.
3U4Y · Uncharacterized protein: “The crystal structure of a functionally unknown protein (DTOX_1751) from desulfotomaculum acetoxidans dsm 771.”. X-ray diffraction, 4 pockets (best druggability 0.82). MolNFT v1 #80710 on GenesisL1: 3D…
- PDB
- 3U4Y
- Type
- protein
- Length
- 636 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein
- UniProt
- C8VX32
- Pockets
- 4 · best druggability 0.82
Structure
x-ray diffraction · 2 distinct chains · 2% helix, 50% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized protein | protein | 319 | 2% helix, 51% strand | C8VX32 |
| B | Uncharacterized protein | protein | 317 | 2% helix, 49% strand | C8VX32 |
Ligands and binding sites
- TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 620 | 0.82 | 0.87 | 40 | empty |
| 2 | 542 | 0.81 | 0.87 | 40 | empty |
| 3 | 92 | 0.37 | 0.75 | 26 | empty |
| 4 | 72 | 0.32 | 0.75 | 17 | empty |
Interfaces
1 interface between chains.
- A–B · 445 Ų buried · 3 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 6 modified, 2 disulfide (engineered, disulfide).
Compared structures
- 3U4Y · The crystal structure of a functionally unknown protein (Dtox_1751) from Desulfotomaculum… · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C8VX32
- Elsewhere: RCSB PDB 3U4Y · PDBe 3U4Y · UniProt C8VX32
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