MolNFT v1 · #8054 · protein

Core GP32, DNA-binding protein

1GPC · Protein (core GP32): “Core GP32, DNA-binding protein”. X-ray diffraction, 1 ligand (ZN), 2 pockets (best druggability 0.38). MolNFT v1 #8054 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1GPC
Type: protein
Length: 218 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Protein (core GP32)
UniProt: P03695
Ligands: ZN
Pockets: 2 · best druggability 0.38

Structure

x-ray diffraction · 1 distinct chain · 30% helix, 26% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Protein (core GP32)	protein	218	30% helix, 26% strand	P03695

Ligands and binding sites

ZN · Zinc ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	101	0.38	0.75	18	empty
2	60	0.36	0.78	13	empty

Compared structures

1GPC · Core GP32, DNA-binding protein · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P03695
Elsewhere: RCSB PDB 1GPC · PDBe 1GPC · UniProt P03695

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