MolNFT v1 · #80413 · protein

Crystal structure of the GP42 transglutaminase from phytophthora sojae

3TW5 · Transglutaminase elicitor: “Crystal structure of the GP42 transglutaminase from phytophthora sojae”. X-ray diffraction, 1 pocket (best druggability 0.52). MolNFT v1 #80413 on GenesisL1: 3D structure, binding sites and pockets in…

PDB: 3TW5
Type: protein
Length: 688 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Transglutaminase elicitor
EC: 2.3.2.13
UniProt: Q6Q475
Pockets: 1 · best druggability 0.52

Structure

x-ray diffraction · 1 distinct chain · 34% helix, 24% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Transglutaminase elicitor (EC 2.3.2.13)	protein	344	34% helix, 24% strand	Q6Q475

Ligands and binding sites

CXS · 3-cyclohexyl-1-propylsulfonic acid · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	329	0.52	0.74	35	empty

Interfaces

1 interface between chains.

A–B · 265 Å² buried · 1 hydrogen bond · protein-protein

Modifications

Observed in the structure: 6 disulfide (disulfide).

Compared structures

3TW5 · Crystal structure of the GP42 transglutaminase from Phytophthora sojae · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q6Q475
Elsewhere: RCSB PDB 3TW5 · PDBe 3TW5 · UniProt Q6Q475

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