MolNFT v1 · #80325 · protein
Crystal structure of E. COLI hypf with AMP-cpp and carbamoyl phosphate
3TTD · Transcriptional regulatory protein: “Crystal structure of E. COLI hypf with AMP-cpp and carbamoyl phosphate”. X-ray diffraction, 2 ligands (ZN, MG), 4 pockets (best druggability 0.86). MolNFT v1 #80325 on GenesisL1: 3D structure…
- PDB
- 3TTD
- Type
- protein
- Length
- 647 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Transcriptional regulatory protein
- EC
- 2.1.3.-
- UniProt
- Q7ABC4
- Ligands
- ZN, MG
- Pockets
- 4 · best druggability 0.86
Structure
x-ray diffraction · 1 distinct chain · 36% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Transcriptional regulatory protein (EC 2.1.3.-) | protein | 647 | 36% helix, 19% strand | Q7ABC4 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1106 | 0.86 | 0.87 | 117 | empty |
| 2 | 77 | 0.37 | 0.77 | 19 | empty |
| 3 | 87 | 0.33 | 0.73 | 21 | empty |
| 4 | 68 | 0.30 | 0.74 | 21 | empty |
Compared structures
- 3TTD · Crystal structure of E. coli HypF with AMP-CPP and carbamoyl phosphate · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q7ABC4
- Elsewhere: RCSB PDB 3TTD · PDBe 3TTD · UniProt Q7ABC4
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