MolNFT v1 · #80258 · protein
Structure of the gaf domain from a phosphoenolpyruvate-protein phosphotransferase (ptsp) from coxiella burnetii
3TRC: “Structure of the gaf domain from a phosphoenolpyruvate-protein phosphotransferase (ptsp) from coxiella…”. X-ray diffraction, 2 ligands (NA, PO4), 1 pocket (best druggability 0.78). MolNFT v1 #80258 on GenesisL1: 3D structure…
- PDB
- 3TRC
- Type
- protein
- Length
- 168 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Phosphoenolpyruvate-protein phosphotransferase
- EC
- 2.7.3.9
- UniProt
- Q83BF9
- Ligands
- NA, PO4
- Pockets
- 1 · best druggability 0.78
Structure
x-ray diffraction · 1 distinct chain · 43% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Phosphoenolpyruvate-protein phosphotransferase (EC 2.7.3.9) | protein | 168 | 43% helix, 24% strand | Q83BF9 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 220 | 0.78 | 0.91 | 30 | PO4 |
Modifications
Observed in the structure: 3 modified (engineered).
Compared structures
- 3TRC · Structure of the GAF domain from a phosphoenolpyruvate-protein phosphotransferase (ptsP)… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q83BF9
- Elsewhere: RCSB PDB 3TRC · PDBe 3TRC · UniProt Q83BF9
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