MolNFT v1 · #79618 · protein

The crystal structure of a functionally unknown protein LEBU_0176 from leptotrichia buccalis C-1013-B

3T8K · Uncharacterized protein: “The crystal structure of a functionally unknown protein LEBU_0176 from leptotrichia buccalis C-1013-B”. X-ray diffraction, 3 pockets (best druggability 0.80). MolNFT v1 #79618 on GenesisL1: 3D structure…

PDB: 3T8K
Type: protein
Length: 367 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Uncharacterized protein
UniProt: C7NDE2
Pockets: 3 · best druggability 0.80

Structure

x-ray diffraction · 2 distinct chains · 56% helix, 2% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Uncharacterized protein	protein	184	57% helix, 1% strand	C7NDE2
B	Uncharacterized protein	protein	183	55% helix, 2% strand	C7NDE2

Pockets

3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	984	0.80	0.81	68	empty
2	99	0.55	0.85	21	empty
3	59	0.33	0.77	20	empty

Interfaces

1 interface between chains.

A–B · 1127 Å² buried · 8 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 12 modified, 1 disulfide (engineered, disulfide).

Compared structures

3T8K · The crystal structure of a functionally unknown protein Lebu_0176 from Leptotrichia… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt C7NDE2
Elsewhere: RCSB PDB 3T8K · PDBe 3T8K · UniProt C7NDE2

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