MolNFT v1 · #79597 · protein

Structure of methanocaldococcus jannaschii nop N-terminal domain

3T7Z · Nucleolar protein nop 56/58: “Structure of methanocaldococcus jannaschii nop N-terminal domain”. X-ray diffraction, 1 ligand (NA), 1 pocket (best druggability 0.37). MolNFT v1 #79597 on GenesisL1: 3D structure, binding sites and…

PDB: 3T7Z
Type: protein
Length: 119 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Nucleolar protein nop 56/58
UniProt: Q58105
Ligands: NA
Pockets: 1 · best druggability 0.37

Structure

x-ray diffraction · 1 distinct chain · 57% helix, 16% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Nucleolar protein nop 56/58	protein	119	57% helix, 16% strand	Q58105

Ligands and binding sites

NA · Sodium ion · metal · chains A
ACT · Acetate ion · additive · chains A
GOL · Glycerol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	83	0.37	0.76	20	empty

Compared structures

3T7Z · Structure of Methanocaldococcus jannaschii Nop N-terminal domain · the same entry in another collection · chain A against A, TM-score 1.00
Q58105 · AlphaFold monomer V2.0 prediction for uncharacterized NOP5 family protein MJ0694 (Q58105) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q58105
Elsewhere: RCSB PDB 3T7Z · PDBe 3T7Z · UniProt Q58105

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