MolNFT v1 · #79479 · protein
Aiiglmv segment from ALZHEIMER'S amyloid-beta displayed on 54-membered macrocycle scaffold
3T4G · Cyclic pseudo-peptide (ORN)AIIGLMV(ORN)KF(HAO)(4BF)K: “Aiiglmv segment from ALZHEIMER'S amyloid-beta displayed on 54-membered macrocycle scaffold”. X-ray diffraction, 1 ligand (HAO). MolNFT v1 #79479 on GenesisL1: 3D structure…
- PDB
- 3T4G
- Type
- protein
- Length
- 26 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cyclic pseudo-peptide (ORN)AIIGLMV(ORN)KF(HAO)(4BF)K
- Ligands
- HAO
Structure
x-ray diffraction · 1 distinct chain · 0% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Cyclic pseudo-peptide (ORN)AIIGLMV(ORN)KF(HAO)(4BF)K | protein | 13 | 0% helix, 0% strand | — |
Ligands and binding sites
- HAO · {[3-(hydrazinocarbonyl)-4-methoxyphenyl]amino}(oxo) acetic acid · ligand · 2 copies · chains A, B
- MPD · (4S)-2-methyl-2,4-pentanediol · additive · 5 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 36 Ų buried · 0 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 6 modified, 4 covalent (nonstandard, covalent ligand).
Compared structures
- 3T4G · AIIGLMV segment from Alzheimer's Amyloid-Beta displayed on 54-membered macrocycle scaffold · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 3T4G · PDBe 3T4G
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