MolNFT v1 · #79354 · protein
Motor domain structure of the KAR3-like kinesin from ashbya gossypii
3T0Q · AGR253WP: “Motor domain structure of the KAR3-like kinesin from ashbya gossypii”. X-ray diffraction, 2 ligands (ADP, MG), 4 pockets (best druggability 0.34). MolNFT v1 #79354 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 3T0Q
- Type
- protein
- Length
- 304 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- AGR253WP
- UniProt
- Q74ZE6
- Ligands
- ADP, MG
- Pockets
- 4 · best druggability 0.34
Structure
x-ray diffraction · 1 distinct chain · 37% helix, 31% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | AGR253WP | protein | 304 | 37% helix, 31% strand | Q74ZE6 |
Ligands and binding sites
- ADP · Adenosine-5'-diphosphate · ligand · chains A
- MG · Magnesium ion · metal · chains A
- EDO · 1,2-ethanediol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 85 | 0.34 | 0.75 | 18 | empty |
| 2 | 64 | 0.30 | 0.75 | 20 | empty |
| 3 | 52 | 0.30 | 0.76 | 13 | empty |
| 4 | 57 | 0.29 | 0.75 | 23 | MG |
Compared structures
- 3T0Q · Motor Domain Structure of the Kar3-like kinesin from Ashbya gossypii · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q74ZE6
- Elsewhere: RCSB PDB 3T0Q · PDBe 3T0Q · UniProt Q74ZE6
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