MolNFT v1 · #79278 · protein
Crystal structure of the aaa+ protein cbbx, native structure
3SYL: “Crystal structure of the aaa+ protein cbbx, native structure”. X-ray diffraction, 1 ligand (SO4), 5 pockets (best druggability 0.73). MolNFT v1 #79278 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3SYL
- Type
- protein
- Length
- 576 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein cbbx
- UniProt
- P95648
- Ligands
- SO4
- Pockets
- 5 · best druggability 0.73
Structure
x-ray diffraction · 2 distinct chains · 55% helix, 11% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein cbbx | protein | 290 | 55% helix, 12% strand | P95648 |
| B | Protein cbbx | protein | 286 | 54% helix, 11% strand | P95648 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 6 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 909 | 0.73 | 0.77 | 79 | SO4 |
| 2 | 107 | 0.53 | 0.83 | 18 | empty |
| 3 | 85 | 0.50 | 0.83 | 15 | empty |
| 4 | 85 | 0.33 | 0.74 | 16 | empty |
| 5 | 53 | 0.27 | 0.74 | 21 | empty |
Interfaces
1 interface between chains.
- A–B · 1420 Ų buried · 14 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P95648
- Elsewhere: RCSB PDB 3SYL · PDBe 3SYL · UniProt P95648
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