MolNFT v1 · #79076 · protein
Engineered low-affinity halide-binding protein derived from YFP: halide-free
3SSP · Green fluorescent protein: “Engineered low-affinity halide-binding protein derived from YFP: halide-free”. X-ray diffraction, 1 ligand (CR2), 2 pockets (best druggability 0.71). MolNFT v1 #79076 on GenesisL1: 3D structure, binding…
- PDB
- 3SSP
- Type
- protein
- Length
- 228 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Green fluorescent protein
- UniProt
- P42212
- Ligands
- CR2
- Pockets
- 2 · best druggability 0.71
Structure
x-ray diffraction · 1 distinct chain · 11% helix, 52% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Green fluorescent protein | protein | 228 | 11% helix, 52% strand | P42212 |
Ligands and binding sites
- CR2 · {(4Z)-2-(aminomethyl)-4-[(4-hydroxyphenyl)methylidene]-5-oxo-4,5-dihydro-1H-imidazol-1-yl}acetic acid · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 57 | 0.71 | 0.98 | 22 | CR2 |
| 2 | 97 | 0.45 | 0.79 | 18 | empty |
Modifications
Observed in the structure: 2 cofactor (chromophore).
Compared structures
- 3SSP · Engineered low-affinity halide-binding protein derived from YFP: halide-free · the same entry in another collection · chain A against A, TM-score 1.00
- P42212 · AlphaFold monomer V2.0 prediction for green fluorescent protein (P42212) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P42212
- Elsewhere: RCSB PDB 3SSP · PDBe 3SSP · UniProt P42212
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