MolNFT v1 · #78957 · protein
Cytoplasmic protein STM1381 from salmonella typhimurium LT2
3SOZ: “Cytoplasmic protein STM1381 from salmonella typhimurium LT2”. X-ray diffraction, 8 pockets (best druggability 0.71). MolNFT v1 #78957 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3SOZ
- Type
- protein
- Length
- 735 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cytoplasmic protein STM1381
- UniProt
- Q9Z4S4
- Pockets
- 8 · best druggability 0.71
Structure
x-ray diffraction · 1 distinct chain · 25% helix, 34% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C | Cytoplasmic protein STM1381 | protein | 245 | 25% helix, 34% strand | Q9Z4S4 |
Ligands and binding sites
- GOL · Glycerol · additive · 3 copies · chains A, C, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
8 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 128 | 0.71 | 0.92 | 35 | empty |
| 2 | 429 | 0.68 | 0.80 | 65 | GOL |
| 3 | 157 | 0.59 | 0.83 | 30 | GOL |
| 4 | 147 | 0.47 | 0.77 | 26 | empty |
| 5 | 116 | 0.44 | 0.77 | 21 | empty |
Interfaces
3 interfaces between chains.
- B–C · 1041 Ų buried · 12 hydrogen bonds · protein-protein
- A–C · 984 Ų buried · 10 hydrogen bonds · protein-protein
- A–B · 978 Ų buried · 10 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 21 modified (engineered).
Compared structures
- 3SOZ · Cytoplasmic Protein STM1381 from Salmonella typhimurium LT2 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9Z4S4
- Elsewhere: RCSB PDB 3SOZ · PDBe 3SOZ · UniProt Q9Z4S4
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