MolNFT v1 · #78942 · protein

Dichelobacter nodosus pilin fima

3SOK · Fimbrial protein: “Dichelobacter nodosus pilin fima”. X-ray diffraction, 2 pockets (best druggability 0.36). MolNFT v1 #78942 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 3SOK
Type: protein
Length: 293 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Fimbrial protein
UniProt: P02975
Pockets: 2 · best druggability 0.36

Structure

x-ray diffraction · 2 distinct chains · 37% helix, 21% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Fimbrial protein	protein	151	36% helix, 21% strand	P02975
B	Fimbrial protein	protein	142	37% helix, 21% strand	P02975

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	122	0.36	0.73	20	empty
2	65	0.34	0.76	15	empty

Interfaces

1 interface between chains.

A–B · 577 Å² buried · 4 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 2 disulfide (disulfide).

Compared structures

3SOK · Dichelobacter nodosus pilin FimA · the same entry in another collection · chain A against A, TM-score 1.00
P02975 · AlphaFold monomer V2.0 prediction for type IV major fimbrial protein fima (P02975) · a predicted model of the same protein · chain B against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P02975
Elsewhere: RCSB PDB 3SOK · PDBe 3SOK · UniProt P02975

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