MolNFT v1 · #78941 · protein
Francisella tularensis pilin pile
3SOJ: “Francisella tularensis pilin pile”. X-ray diffraction, 1 ligand (SO4), 2 pockets (best druggability 0.66). MolNFT v1 #78941 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3SOJ
- Type
- protein
- Length
- 229 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Pile
- UniProt
- Q5NGF6
- Ligands
- SO4
- Pockets
- 2 · best druggability 0.66
Structure
x-ray diffraction · 2 distinct chains · 31% helix, 34% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pile | protein | 114 | 32% helix, 35% strand | Q5NGF6 |
| B | Pile | protein | 115 | 30% helix, 34% strand | Q5NGF6 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 345 | 0.66 | 0.81 | 36 | empty |
| 2 | 64 | 0.33 | 0.77 | 19 | empty |
Interfaces
1 interface between chains.
- A–B · 634 Ų buried · 12 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 3SOJ · Francisella tularensis pilin PilE · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5NGF6
- Elsewhere: RCSB PDB 3SOJ · PDBe 3SOJ · UniProt Q5NGF6
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