MolNFT v1 · #78893 · protein
Human RAVER1 RRM1-3 domains (residues 39-320)
3SMZ · Ribonucleoprotein ptb-binding 1: “Human RAVER1 RRM1-3 domains (residues 39-320)”. X-ray diffraction, 1 ligand (SO4), 5 pockets (best druggability 0.56). MolNFT v1 #78893 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3SMZ
- Type
- protein
- Length
- 280 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ribonucleoprotein ptb-binding 1
- UniProt
- Q8IY67
- Ligands
- SO4
- Pockets
- 5 · best druggability 0.56
Structure
x-ray diffraction · 1 distinct chain · 31% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ribonucleoprotein ptb-binding 1 | protein | 280 | 31% helix, 30% strand | Q8IY67 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 127 | 0.56 | 0.83 | 23 | empty |
| 2 | 65 | 0.47 | 0.84 | 19 | empty |
| 3 | 70 | 0.44 | 0.82 | 17 | empty |
| 4 | 100 | 0.40 | 0.76 | 18 | empty |
| 5 | 58 | 0.33 | 0.77 | 17 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8IY67
- Elsewhere: RCSB PDB 3SMZ · PDBe 3SMZ · UniProt Q8IY67
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