MolNFT v1 · #78790 · protein

Structural characterization of a GII.4 2004 norovirus variant (TCH05)

3SJP · Capsid: “Structural characterization of a GII.4 2004 norovirus variant (TCH05)”. X-ray diffraction, 1 ligand (ZN), 2 pockets (best druggability 0.44). MolNFT v1 #78790 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 3SJP
Type: protein
Length: 294 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Capsid
UniProt: Q5EGK8
Ligands: ZN
Pockets: 2 · best druggability 0.44

Structure

x-ray diffraction · 1 distinct chain · 6% helix, 34% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Capsid	protein	294	6% helix, 34% strand	Q5EGK8

Ligands and binding sites

ZN · Zinc ion · metal · 7 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	52	0.44	0.84	12	empty
2	62	0.41	0.81	18	ZN

Compared structures

3SJP · Structural characterization of a GII.4 2004 norovirus variant (TCH05) · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q5EGK8
Elsewhere: RCSB PDB 3SJP · PDBe 3SJP · UniProt Q5EGK8

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