MolNFT v1 · #78721 · protein

Crystal structure of UBLCP1

3SHQ: “Crystal structure of UBLCP1”. X-ray diffraction, 1 ligand (MG), 5 pockets (best druggability 0.60). MolNFT v1 #78721 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 3SHQ
Type: protein
Length: 299 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: UBLCP1
EC: 3.1.3.16
UniProt: Q9XZ16
Ligands: MG
Pockets: 5 · best druggability 0.60

Structure

x-ray diffraction · 1 distinct chain · 34% helix, 21% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	UBLCP1 (EC 3.1.3.16)	protein	299	34% helix, 21% strand	Q9XZ16

Ligands and binding sites

MG · Magnesium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	258	0.60	0.80	35	empty
2	223	0.58	0.80	34	empty
3	79	0.46	0.81	17	empty
4	57	0.34	0.77	18	empty
5	64	0.31	0.75	19	empty

Compared structures

3SHQ · Crystal Structure of UBLCP1 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9XZ16
Elsewhere: RCSB PDB 3SHQ · PDBe 3SHQ · UniProt Q9XZ16

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