MolNFT v1 · #78679 · protein

Crystal structure of a susd-like protein (BT_3752) from bacteroides thetaiotaomicron vpi-5482 at 1.70 a resolution

3SGH · Susd homolog: “Crystal structure of a susd-like protein (BT_3752) from bacteroides thetaiotaomicron vpi-5482 at 1.70 a…”. X-ray diffraction, 1 ligand (CL), 10 pockets (best druggability 0.75). MolNFT v1 #78679 on GenesisL1: 3D…

PDB: 3SGH
Type: protein
Length: 968 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Susd homolog
UniProt: Q8A1B4
Ligands: CL
Pockets: 10 · best druggability 0.75

Structure

x-ray diffraction · 1 distinct chain · 48% helix, 4% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Susd homolog	protein	484	48% helix, 4% strand	Q8A1B4

Ligands and binding sites

CL · Chloride ion · ion · 20 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

10 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1122	0.75	0.78	84	CL
2	75	0.75	0.98	27	empty
3	77	0.74	0.98	26	empty
4	77	0.53	0.86	20	empty
5	74	0.46	0.81	14	empty

Interfaces

1 interface between chains.

A–B · 579 Å² buried · 9 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 30 modified (engineered).

Compared structures

3SGH · Crystal structure of a SusD-like protein (BT_3752) from Bacteroides thetaiotaomicron… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8A1B4
Elsewhere: RCSB PDB 3SGH · PDBe 3SGH · UniProt Q8A1B4

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