MolNFT v1 · #78577 · protein

1.7 ångström resolution crystal structure of putative phosphatase from clostridium difficile

3SD7: “1.7 ångström resolution crystal structure of putative phosphatase from clostridium difficile”. X-ray diffraction, 2 ligands (NA, CL), 1 pocket (best druggability 0.73). MolNFT v1 #78577 on GenesisL1: 3D structure, binding sites and…

PDB: 3SD7
Type: protein
Length: 215 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative phosphatase
UniProt: Q181K6
Ligands: NA, CL
Pockets: 1 · best druggability 0.73

Structure

x-ray diffraction · 1 distinct chain · 51% helix, 17% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Putative phosphatase	protein	215	51% helix, 17% strand	Q181K6

Ligands and binding sites

NA · Sodium ion · metal · chains A
CL · Chloride ion · ion · chains A
GOL · Glycerol · additive · 2 copies · chains A
PGE · Triethylene glycol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	525	0.73	0.81	41	NA, CL

Compared structures

3SD7 · 1.7 Angstrom Resolution Crystal Structure of Putative Phosphatase from Clostridium… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q181K6
Elsewhere: RCSB PDB 3SD7 · PDBe 3SD7 · UniProt Q181K6

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