MolNFT v1 · #78405 · protein
Eal domain of phosphodiesterase pdea
3S83 · Ggdef family protein: “Eal domain of phosphodiesterase pdea”. X-ray diffraction, 1 ligand (K), 2 pockets (best druggability 0.61). MolNFT v1 #78405 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3S83
- Type
- protein
- Length
- 256 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ggdef family protein
- UniProt
- Q9A310
- Ligands
- K
- Pockets
- 2 · best druggability 0.61
Structure
x-ray diffraction · 1 distinct chain · 49% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ggdef family protein | protein | 256 | 49% helix, 21% strand | Q9A310 |
Ligands and binding sites
- K · Potassium ion · metal · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 340 | 0.61 | 0.78 | 38 | K |
| 2 | 62 | 0.45 | 0.83 | 19 | empty |
Modifications
Observed in the structure: 9 modified (engineered).
Compared structures
- 3S83 · EAL domain of phosphodiesterase PdeA · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9A310
- Elsewhere: RCSB PDB 3S83 · PDBe 3S83 · UniProt Q9A310
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