MolNFT v1 · #78338 · protein
Saposin-like protein na-slp-1
3S63: “Saposin-like protein na-slp-1”. X-ray diffraction, 1 pocket (best druggability 0.33). MolNFT v1 #78338 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3S63
- Type
- protein
- Length
- 178 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Saposin-like protein
- Pockets
- 1 · best druggability 0.33
Structure
x-ray diffraction · 2 distinct chains · 63% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Saposin-like protein | protein | 88 | 65% helix, 0% strand | — |
| B | Saposin-like protein | protein | 90 | 62% helix, 0% strand | — |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 55 | 0.33 | 0.77 | 17 | empty |
Interfaces
1 interface between chains.
- A–B · 505 Ų buried · 8 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 6 disulfide (disulfide).
Compared structures
- 3S63 · Saposin-like protein Na-SLP-1 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 3S63 · PDBe 3S63
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