MolNFT v1 · #78283 · protein
Lactose phosphorylase in complex with sulfate
3S4C: “Lactose phosphorylase in complex with sulfate”. X-ray diffraction, 1 ligand (SO4), 6 pockets (best druggability 0.66). MolNFT v1 #78283 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3S4C
- Type
- protein
- Length
- 822 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Lactose phosphorylase
- EC
- 2.4.1.20
- UniProt
- Q7WTR6
- Ligands
- SO4
- Pockets
- 6 · best druggability 0.66
Structure
x-ray diffraction · 1 distinct chain · 29% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Lactose phosphorylase (EC 2.4.1.20) | protein | 822 | 29% helix, 27% strand | Q7WTR6 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
6 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 272 | 0.66 | 0.83 | 40 | SO4 |
| 2 | 259 | 0.65 | 0.82 | 29 | empty |
| 3 | 110 | 0.53 | 0.83 | 14 | empty |
| 4 | 83 | 0.39 | 0.77 | 22 | empty |
| 5 | 51 | 0.29 | 0.75 | 14 | empty |
Compared structures
- 3S4C · Lactose phosphorylase in complex with sulfate · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q7WTR6
- Elsewhere: RCSB PDB 3S4C · PDBe 3S4C · UniProt Q7WTR6
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