MolNFT v1 · #78150 · protein
Apis mellifera obp 14 in complex with the citrus odorant citralva (3, 7-dimethylocta-2,6-dienenitrile)
3S0D · OBP14: “Apis mellifera obp 14 in complex with the citrus odorant citralva (3, 7-dimethylocta-2,6-dienenitrile)”. X-ray diffraction, 1 ligand (CTV), 1 pocket (best druggability 0.80). MolNFT v1 #78150 on GenesisL1: 3D structure…
- PDB
- 3S0D
- Type
- protein
- Length
- 119 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- OBP14
- UniProt
- Q1W640
- Ligands
- CTV
- Pockets
- 1 · best druggability 0.80
Structure
x-ray diffraction · 1 distinct chain · 64% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | OBP14 | protein | 119 | 64% helix, 2% strand | Q1W640 |
Ligands and binding sites
- CTV · (2Z)-3,7-dimethylocta-2,6-dienenitrile · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 121 | 0.80 | 0.98 | 19 | CTV |
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 3S0D · Apis mellifera OBP 14 in complex with the citrus odorant citralva… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q1W640
- Elsewhere: RCSB PDB 3S0D · PDBe 3S0D · UniProt Q1W640
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