MolNFT v1 · #77909 · protein
Cellobiose phosphorylase from cellulomonas uda in complex with sulfate and glycerol
3RSY: “Cellobiose phosphorylase from cellulomonas uda in complex with sulfate and glycerol”. X-ray diffraction, 1 ligand (SO4), 13 pockets (best druggability 0.82). MolNFT v1 #77909 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 3RSY
- Type
- protein
- Length
- 1,644 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cellobiose phosphorylase
- EC
- 2.4.1.20
- UniProt
- Q7WTR6
- Ligands
- SO4
- Pockets
- 13 · best druggability 0.82
Structure
x-ray diffraction · 1 distinct chain · 29% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Cellobiose phosphorylase (EC 2.4.1.20) | protein | 822 | 29% helix, 27% strand | Q7WTR6 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
13 pockets found on a 1 Å grid, 9 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 995 | 0.82 | 0.84 | 86 | SO4, GOL |
| 2 | 820 | 0.76 | 0.80 | 64 | SO4, GOL |
| 3 | 239 | 0.74 | 0.88 | 41 | empty |
| 4 | 255 | 0.73 | 0.87 | 39 | empty |
| 5 | 190 | 0.70 | 0.88 | 37 | empty |
Interfaces
1 interface between chains.
- A–B · 3223 Ų buried · 51 hydrogen bonds · protein-protein
Compared structures
- 3RSY · Cellobiose phosphorylase from Cellulomonas uda in complex with sulfate and glycerol · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q7WTR6
- Elsewhere: RCSB PDB 3RSY · PDBe 3RSY · UniProt Q7WTR6
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