MolNFT v1 · #77861 · protein

Crystal structure of the cytoplasmic N-terminal domain of subunit I, homolog of subunit a, of V-ATPase

3RRK · V-type ATPase 116 kda subunit: “Crystal structure of the cytoplasmic N-terminal domain of subunit I, homolog of subunit a, of V-ATPase”. X-ray diffraction, 1 ligand (SO4), 1 pocket (best druggability 0.36). MolNFT v1 #77861 on…

PDB: 3RRK
Type: protein
Length: 301 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: V-type ATPase 116 kda subunit
UniProt: D3PQI8
Ligands: SO4
Pockets: 1 · best druggability 0.36

Structure

x-ray diffraction · 1 distinct chain · 62% helix, 16% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	V-type ATPase 116 kda subunit	protein	301	62% helix, 16% strand	D3PQI8

Ligands and binding sites

SO4 · Sulfate ion · ion · chains A
NHE · 2-[N-cyclohexylamino]ethane sulfonic acid · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	86	0.36	0.75	22	empty

Compared structures

3RRK · Crystal structure of the cytoplasmic N-terminal domain of subunit I, homolog of subunit… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt D3PQI8
Elsewhere: RCSB PDB 3RRK · PDBe 3RRK · UniProt D3PQI8

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