MolNFT v1 · #77735 · protein
Cupin 2 conserved barrel domain protein from leptotrichia buccalis
3RNS: “Cupin 2 conserved barrel domain protein from leptotrichia buccalis”. X-ray diffraction, 2 pockets (best druggability 0.44). MolNFT v1 #77735 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3RNS
- Type
- protein
- Length
- 208 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cupin 2 conserved barrel domain protein
- UniProt
- C7NCX6
- Pockets
- 2 · best druggability 0.44
Structure
x-ray diffraction · 1 distinct chain · 3% helix, 58% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cupin 2 conserved barrel domain protein | protein | 208 | 3% helix, 58% strand | C7NCX6 |
Ligands and binding sites
- ACT · Acetate ion · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 88 | 0.44 | 0.79 | 19 | empty |
| 2 | 59 | 0.36 | 0.78 | 18 | empty |
Modifications
Observed in the structure: 6 modified (engineered).
Compared structures
- 3RNS · Cupin 2 conserved barrel domain protein from Leptotrichia buccalis · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C7NCX6
- Elsewhere: RCSB PDB 3RNS · PDBe 3RNS · UniProt C7NCX6
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