MolNFT v1 · #77668 · protein

Crystal structure of yeast af-9 homolog protein YAF9

3RLS · Protein af-9 homolog: “Crystal structure of yeast af-9 homolog protein YAF9”. X-ray diffraction, 1 pocket (best druggability 0.27). MolNFT v1 #77668 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 3RLS
Type: protein
Length: 296 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Protein af-9 homolog
UniProt: P53930
Pockets: 1 · best druggability 0.27

Structure

x-ray diffraction · 2 distinct chains · 9% helix, 44% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Protein af-9 homolog	protein	152	10% helix, 42% strand	P53930
B	Protein af-9 homolog	protein	144	8% helix, 45% strand	P53930

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	59	0.27	0.73	15	empty

Interfaces

1 interface between chains.

A–B · 326 Å² buried · 5 hydrogen bonds · protein-protein

Compared structures

3RLS · Crystal structure of yeast AF-9 homolog protein Yaf9 · the same entry in another collection · chain A against A, TM-score 1.00
P53930 · AlphaFold monomer V2.0 prediction for protein af-9 homolog (P53930) · a predicted model of the same protein · chain B against A, TM-score 0.96

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P53930
Elsewhere: RCSB PDB 3RLS · PDBe 3RLS · UniProt P53930

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