MolNFT v1 · #77619 · protein
Hepatitis E virus capsid protein E2S domain (genotype IV)
3RKC: “Hepatitis E virus capsid protein E2S domain (genotype IV)”. X-ray diffraction, 2 pockets (best druggability 0.34). MolNFT v1 #77619 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3RKC
- Type
- protein
- Length
- 293 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Capsid protein
- UniProt
- D3VV84
- Pockets
- 2 · best druggability 0.34
Structure
x-ray diffraction · 2 distinct chains · 3% helix, 49% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Capsid protein | protein | 147 | 4% helix, 50% strand | D3VV84 |
| B | Capsid protein | protein | 146 | 2% helix, 49% strand | D3VV84 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 55 | 0.34 | 0.79 | 17 | empty |
| 2 | 52 | 0.33 | 0.78 | 17 | empty |
Interfaces
1 interface between chains.
- A–B · 1187 Ų buried · 11 hydrogen bonds · protein-protein
Compared structures
- 3RKC · Hepatitis E Virus Capsid Protein E2s Domain (genotype IV) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D3VV84
- Elsewhere: RCSB PDB 3RKC · PDBe 3RKC · UniProt D3VV84
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.