MolNFT v1 · #77563 · protein

Siphovirus 9NA tailspike receptor binding domain

3RIQ · Tailspike protein: “Siphovirus 9NA tailspike receptor binding domain”. X-ray diffraction, 2 pockets (best druggability 0.43). MolNFT v1 #77563 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 3RIQ
Type: protein
Length: 541 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Tailspike protein
Pockets: 2 · best druggability 0.43

Structure

x-ray diffraction · 1 distinct chain · 6% helix, 43% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Tailspike protein	protein	541	6% helix, 43% strand	—

Ligands and binding sites

GOL · Glycerol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	136	0.43	0.76	27	empty
2	54	0.26	0.73	12	empty

Compared structures

3RIQ · Siphovirus 9NA tailspike receptor binding domain · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 3RIQ · PDBe 3RIQ

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.