MolNFT v1 · #77375 · protein
Crystal structure of a putative uncharacterized protein from mycobacterium paratuberculosis
3RD5 · MYPAA.01249.C: “Crystal structure of a putative uncharacterized protein from mycobacterium paratuberculosis”. X-ray diffraction, 2 pockets (best druggability 0.43). MolNFT v1 #77375 on GenesisL1: 3D structure, binding sites and…
- PDB
- 3RD5
- Type
- protein
- Length
- 268 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- MYPAA.01249.C
- UniProt
- Q741V7
- Pockets
- 2 · best druggability 0.43
Structure
x-ray diffraction · 1 distinct chain · 43% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | MYPAA.01249.C | protein | 268 | 43% helix, 17% strand | Q741V7 |
Ligands and binding sites
- EPE · 4-(2-hydroxyethyl)-1-piperazine ethanesulfonic acid · additive · chains A
- EDO · 1,2-ethanediol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 71 | 0.43 | 0.81 | 15 | empty |
| 2 | 70 | 0.43 | 0.81 | 22 | empty |
Compared structures
- 3RD5 · Crystal structure of a putative uncharacterized protein from Mycobacterium… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q741V7
- Elsewhere: RCSB PDB 3RD5 · PDBe 3RD5 · UniProt Q741V7
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