MolNFT v1 · #77374 · protein
Crystal structure of PROPEN_03304 from proteus penneri atcc 35198 northeast structural genomics consortium target id PVR55
3RD4 · Uncharacterized protein: “Crystal structure of PROPEN_03304 from proteus penneri atcc 35198 northeast structural genomics consortium…”. X-ray diffraction, 2 pockets (best druggability 0.69). MolNFT v1 #77374 on GenesisL1: 3D…
- PDB
- 3RD4
- Type
- protein
- Length
- 318 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein
- UniProt
- C0AZM8
- Pockets
- 2 · best druggability 0.69
Structure
x-ray diffraction · 4 distinct chains · 6% helix, 56% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized protein | protein | 76 | 7% helix, 51% strand | C0AZM8 |
| B | Uncharacterized protein | protein | 82 | 5% helix, 60% strand | C0AZM8 |
| C | Uncharacterized protein | protein | 80 | 8% helix, 54% strand | C0AZM8 |
| D | Uncharacterized protein | protein | 80 | 6% helix, 59% strand | C0AZM8 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 647 | 0.69 | 0.77 | 50 | empty |
| 2 | 130 | 0.35 | 0.72 | 21 | empty |
Interfaces
6 interfaces between chains.
- B–D · 649 Ų buried · 13 hydrogen bonds · protein-protein
- A–D · 630 Ų buried · 11 hydrogen bonds · protein-protein
- B–C · 622 Ų buried · 10 hydrogen bonds · protein-protein
- A–B · 82 Ų buried · 0 hydrogen bonds · protein-protein
- A–C · 50 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 3RD4 · Crystal structure of PROPEN_03304 from Proteus penneri ATCC 35198 Northeast Structural… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C0AZM8
- Elsewhere: RCSB PDB 3RD4 · PDBe 3RD4 · UniProt C0AZM8
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