MolNFT v1 · #77341 · protein
Crystal structure of uncharacterized protein YLR301W from saccharomycces cerevisiae
3RBY: “Crystal structure of uncharacterized protein YLR301W from saccharomycces cerevisiae”. X-ray diffraction, 1 ligand (SO4), 4 pockets (best druggability 0.73). MolNFT v1 #77341 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 3RBY
- Type
- protein
- Length
- 490 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein YLR301W
- UniProt
- Q05905
- Ligands
- SO4
- Pockets
- 4 · best druggability 0.73
Structure
x-ray diffraction · 1 distinct chain · 6% helix, 48% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Uncharacterized protein YLR301W | protein | 245 | 6% helix, 48% strand | Q05905 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 657 | 0.73 | 0.79 | 67 | PGE |
| 2 | 720 | 0.72 | 0.78 | 73 | PGE |
| 3 | 150 | 0.46 | 0.76 | 24 | empty |
| 4 | 119 | 0.43 | 0.76 | 20 | empty |
Interfaces
1 interface between chains.
- A–B · 1427 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
- 3RBY · Crystal structure of uncharacterized protein YLR301w from Saccharomycces cerevisiae · the same entry in another collection · chain A against A, TM-score 1.00
- Q05905 · AlphaFold monomer V2.0 prediction for protein HRI1 (Q05905) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q05905
- Elsewhere: RCSB PDB 3RBY · PDBe 3RBY · UniProt Q05905
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