MolNFT v1 · #77281 · protein

Crystal structure of T. celer L30E E6A/R92A variant

3RA5 · 50S ribosomal protein L30E: “Crystal structure of T. celer L30E E6A/R92A variant”. X-ray diffraction, 1 ligand (SO4), 1 pocket (best druggability 0.43). MolNFT v1 #77281 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 3RA5
Type: protein
Length: 194 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: 50S ribosomal protein L30E
UniProt: P29160
Ligands: SO4
Pockets: 1 · best druggability 0.43

Structure

x-ray diffraction · 1 distinct chain · 43% helix, 20% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	50S ribosomal protein L30E	protein	97	43% helix, 20% strand	P29160

Ligands and binding sites

SO4 · Sulfate ion · ion · 6 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	87	0.43	0.79	21	empty

Interfaces

1 interface between chains.

A–B · 712 Å² buried · 7 hydrogen bonds · protein-protein

Compared structures

3RA5 · Crystal structure of T. celer L30e E6A/R92A variant · the same entry in another collection · chain A against A, TM-score 1.00
P29160 · AlphaFold monomer V2.0 prediction for 50S ribosomal protein L30E (P29160) · a predicted model of the same protein · chain A against A, TM-score 0.96

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P29160
Elsewhere: RCSB PDB 3RA5 · PDBe 3RA5 · UniProt P29160

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