MolNFT v1 · #77159 · protein
Crystal structure of NAD-dependent EPIMERASE/DEHYDRATASE from veillonella parvula dsm 2008 with cz-methylated lysine
3R6D: “Crystal structure of NAD-dependent EPIMERASE/DEHYDRATASE from veillonella parvula dsm 2008 with cz-methylated…”. X-ray diffraction, 1 pocket (best druggability 0.57). MolNFT v1 #77159 on GenesisL1: 3D structure, binding sites and…
- PDB
- 3R6D
- Type
- protein
- Length
- 221 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- NAD-dependent EPIMERASE/DEHYDRATASE
- UniProt
- D1BQI7
- Pockets
- 1 · best druggability 0.57
Structure
x-ray diffraction · 1 distinct chain · 37% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | NAD-dependent EPIMERASE/DEHYDRATASE | protein | 221 | 37% helix, 22% strand | D1BQI7 |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 271 | 0.57 | 0.77 | 34 | empty |
Modifications
Observed in the structure: 11 modified (methylation, engineered).
Compared structures
- 3R6D · Crystal structure of NAD-dependent epimerase/dehydratase from Veillonella parvula DSM… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D1BQI7
- Elsewhere: RCSB PDB 3R6D · PDBe 3R6D · UniProt D1BQI7
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