MolNFT v1 · #77125 · protein

Transaldolase from corynebacterium glutamicum

3R5E: “Transaldolase from corynebacterium glutamicum”. X-ray diffraction, 1 ligand (SO4), 2 pockets (best druggability 0.70). MolNFT v1 #77125 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 3R5E
Type: protein
Length: 360 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Transaldolase
EC: 2.2.1.2
UniProt: Q8NQ64
Ligands: SO4
Pockets: 2 · best druggability 0.70

Structure

x-ray diffraction · 1 distinct chain · 59% helix, 11% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Transaldolase (EC 2.2.1.2)	protein	360	59% helix, 11% strand	Q8NQ64

Ligands and binding sites

SO4 · Sulfate ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	288	0.70	0.84	29	SO4
2	85	0.63	0.90	26	empty

Compared structures

3R5E · TRANSALDOLASE from Corynebacterium glutamicum · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8NQ64
Elsewhere: RCSB PDB 3R5E · PDBe 3R5E · UniProt Q8NQ64

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