MolNFT v1 · #77053 · protein
2.23 ångström resolution crystal structure of udp-N-acetylglucosamine 1-carboxyvinyltransferase (mura) from listeria monocytogenes egd-E
3R38 · Udp-N-acetylglucosamine 1-carboxyvinyltransferase 1: “2.23 ångström resolution crystal structure of udp-N-acetylglucosamine 1-carboxyvinyltransferase (mura) from…”. X-ray diffraction, 2 ligands (SO4, CL), 2 pockets (best…
- PDB
- 3R38
- Type
- protein
- Length
- 438 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Udp-N-acetylglucosamine 1-carboxyvinyltransferase 1
- EC
- 2.5.1.7
- UniProt
- Q8Y4C4
- Ligands
- SO4, CL
- Pockets
- 2 · best druggability 0.80
Structure
x-ray diffraction · 1 distinct chain · 34% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Udp-N-acetylglucosamine 1-carboxyvinyltransferase 1 (EC 2.5.1.7) | protein | 438 | 34% helix, 26% strand | Q8Y4C4 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 771 | 0.80 | 0.84 | 63 | CL, SO4 |
| 2 | 115 | 0.39 | 0.75 | 22 | SO4 |
Compared structures
- 3R38 · 2.23 Angstrom resolution crystal structure of UDP-N-acetylglucosamine… · the same entry in another collection · chain A against A, TM-score 1.00
- Q8Y4C4 · AlphaFold monomer V2.0 prediction for udp-N-acetylglucosamine 1-carboxyvinyltransferase 1… · a predicted model of the same protein · chain A against A, TM-score 0.94
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8Y4C4
- Elsewhere: RCSB PDB 3R38 · PDBe 3R38 · UniProt Q8Y4C4
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