MolNFT v1 · #76952 · protein
Crystal structure of probable had family hydrolase from pseudomonas fluorescens pf-5 with bound mg
3R09 · Hydrolase, haloacid dehalogenase-like family: “Crystal structure of probable had family hydrolase from pseudomonas fluorescens pf-5 with bound mg”. X-ray diffraction, 2 ligands (MG, SO4), 1 pocket (best druggability 0.39). MolNFT v1…
- PDB
- 3R09
- Type
- protein
- Length
- 197 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hydrolase, haloacid dehalogenase-like family
- UniProt
- Q4K5L5
- Ligands
- MG, SO4
- Pockets
- 1 · best druggability 0.39
Structure
x-ray diffraction · 1 distinct chain · 49% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hydrolase, haloacid dehalogenase-like family | protein | 197 | 49% helix, 18% strand | Q4K5L5 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 74 | 0.39 | 0.79 | 17 | MG |
Modifications
Observed in the structure: 3 modified (engineered).
Compared structures
- 3R09 · Crystal structure of probable HAD family hydrolase from Pseudomonas fluorescens Pf-5 with… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q4K5L5
- Elsewhere: RCSB PDB 3R09 · PDBe 3R09 · UniProt Q4K5L5
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