MolNFT v1 · #76882 · protein
Crystal structures of ywqe from bacillus subtilis and cpsb from streptococcus pneumoniae, unique metal-dependent tyrosine phosphatases
3QY6 · Tyrosine-protein phosphatase ywqe: “Crystal structures of ywqe from bacillus subtilis and cpsb from streptococcus pneumoniae, unique…”. X-ray diffraction, 2 ligands (FE, MG), 2 pockets (best druggability 0.49). MolNFT v1 #76882 on…
- PDB
- 3QY6
- Type
- protein
- Length
- 247 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Tyrosine-protein phosphatase ywqe
- EC
- 3.1.3.48
- UniProt
- P96717
- Ligands
- FE, MG
- Pockets
- 2 · best druggability 0.49
Structure
x-ray diffraction · 1 distinct chain · 43% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Tyrosine-protein phosphatase ywqe (EC 3.1.3.48) | protein | 247 | 43% helix, 13% strand | P96717 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 55 | 0.49 | 0.86 | 12 | empty |
| 2 | 101 | 0.38 | 0.76 | 21 | empty |
Compared structures
- 3QY6 · Crystal structures of YwqE from Bacillus subtilis and CpsB from Streptococcus pneumoniae… · the same entry in another collection · chain A against A, TM-score 1.00
- P96717 · AlphaFold monomer V2.0 prediction for tyrosine-protein phosphatase ywqe (P96717) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P96717
- Elsewhere: RCSB PDB 3QY6 · PDBe 3QY6 · UniProt P96717
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