MolNFT v1 · #76722 · protein
Crystal structure of a dinb-like protein (CPS_3021) from colwellia psychrerythraea 34H at 2.20 a resolution
3QTH · Uncharacterized protein: “Crystal structure of a dinb-like protein (CPS_3021) from colwellia psychrerythraea 34H at 2.20 a resolution”. X-ray diffraction, 1 ligand (CL), 2 pockets (best druggability 0.52). MolNFT v1 #76722 on…
- PDB
- 3QTH
- Type
- protein
- Length
- 336 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein
- UniProt
- Q47ZP9
- Ligands
- CL
- Pockets
- 2 · best druggability 0.52
Structure
x-ray diffraction · 2 distinct chains · 62% helix, 8% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized protein | protein | 172 | 62% helix, 8% strand | Q47ZP9 |
| B | Uncharacterized protein | protein | 164 | 62% helix, 9% strand | Q47ZP9 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 173 | 0.52 | 0.78 | 24 | CL, GOL |
| 2 | 112 | 0.41 | 0.76 | 20 | GOL, CL |
Interfaces
1 interface between chains.
- A–B · 1898 Ų buried · 20 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 10 modified (engineered).
Compared structures
- 3QTH · Crystal structure of a DinB-like protein (CPS_3021) from Colwellia psychrerythraea 34H at… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q47ZP9
- Elsewhere: RCSB PDB 3QTH · PDBe 3QTH · UniProt Q47ZP9
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