MolNFT v1 · #76570 · protein
Crystal structure of cvir ligand-binding domain bound to the native ligand C6-hsl
3QP1 · Cvir transcriptional regulator: “Crystal structure of cvir ligand-binding domain bound to the native ligand C6-hsl”. X-ray diffraction, 1 ligand (HL6), 1 pocket (best druggability 0.69). MolNFT v1 #76570 on GenesisL1: 3D structure…
- PDB
- 3QP1
- Type
- protein
- Length
- 178 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cvir transcriptional regulator
- UniProt
- D3W065
- Ligands
- HL6
- Pockets
- 1 · best druggability 0.69
Structure
x-ray diffraction · 1 distinct chain · 47% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cvir transcriptional regulator | protein | 178 | 47% helix, 20% strand | D3W065 |
Ligands and binding sites
- HL6 · N-[(3S)-2-oxotetrahydrofuran-3-yl]hexanamide · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 109 | 0.69 | 0.91 | 23 | HL6 |
Compared structures
- 3QP1 · Crystal structure of CviR ligand-binding domain bound to the native ligand C6-HSL · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D3W065
- Elsewhere: RCSB PDB 3QP1 · PDBe 3QP1 · UniProt D3W065
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