MolNFT v1 · #76156 · protein
GSPB
3QC5 · Platelet binding protein gspb: “GSPB”. X-ray diffraction, 3 ligands (HDZ, K, NA), 1 pocket (best druggability 0.27). MolNFT v1 #76156 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3QC5
- Type
- protein
- Length
- 352 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Platelet binding protein gspb
- UniProt
- Q939N5
- Ligands
- HDZ, K, NA
- Pockets
- 1 · best druggability 0.27
Structure
x-ray diffraction · 1 distinct chain · 11% helix, 46% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| X | Platelet binding protein gspb | protein | 352 | 11% helix, 46% strand | Q939N5 |
Ligands and binding sites
- HDZ · Nitrogen molecule · ligand · chains X
- K · Potassium ion · metal · chains X
- NA · Sodium ion · metal · chains X
- GOL · Glycerol · additive · 3 copies · chains X
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 58 | 0.27 | 0.73 | 13 | HDZ |
Compared structures
- 3QC5 · GspB · the same entry in another collection · chain X against X, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q939N5
- Elsewhere: RCSB PDB 3QC5 · PDBe 3QC5 · UniProt Q939N5
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