MolNFT v1 · #76106 · protein
The crystal structure of the N-terminal domain of a merr-like transcriptional regulator from listeria monocytogenes egd-E
3QAO: “The crystal structure of the N-terminal domain of a merr-like transcriptional regulator from listeria…”. X-ray diffraction, 2 pockets (best druggability 0.49). MolNFT v1 #76106 on GenesisL1: 3D structure, binding sites and pockets…
- PDB
- 3QAO
- Type
- protein
- Length
- 140 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Merr-like transcriptional regulator
- UniProt
- Q8Y9K1
- Pockets
- 2 · best druggability 0.49
Structure
x-ray diffraction · 1 distinct chain · 59% helix, 4% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Merr-like transcriptional regulator | protein | 140 | 59% helix, 4% strand | Q8Y9K1 |
Ligands and binding sites
- GOL · Glycerol · additive · 6 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 91 | 0.49 | 0.82 | 17 | empty |
| 2 | 50 | 0.31 | 0.76 | 12 | GOL |
Modifications
Observed in the structure: 4 modified (engineered).
Compared structures
- 3QAO · The crystal structure of the N-terminal domain of a MerR-like transcriptional regulator… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8Y9K1
- Elsewhere: RCSB PDB 3QAO · PDBe 3QAO · UniProt Q8Y9K1
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