MolNFT v1 · #76086 · protein
Crystal structure of rra C-terminal DOMAIN(123-221) from deinococcus radiodurans
3Q9V · DNA-binding response regulator: “Crystal structure of rra C-terminal DOMAIN(123-221) from deinococcus radiodurans”. X-ray diffraction, 4 pockets (best druggability 0.64). MolNFT v1 #76086 on GenesisL1: 3D structure, binding sites…
- PDB
- 3Q9V
- Type
- protein
- Length
- 197 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA-binding response regulator
- UniProt
- Q9RRR8
- Pockets
- 4 · best druggability 0.64
Structure
x-ray diffraction · 2 distinct chains · 34% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA-binding response regulator | protein | 98 | 35% helix, 13% strand | Q9RRR8 |
| B | DNA-binding response regulator | protein | 99 | 33% helix, 13% strand | Q9RRR8 |
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 268 | 0.64 | 0.81 | 32 | empty |
| 2 | 266 | 0.62 | 0.80 | 33 | empty |
| 3 | 54 | 0.32 | 0.77 | 16 | empty |
| 4 | 53 | 0.30 | 0.76 | 13 | empty |
Interfaces
1 interface between chains.
- A–B · 517 Ų buried · 3 hydrogen bonds · protein-protein
Compared structures
- 3Q9V · Crystal structure of rra c-terminal domain(123-221) from Deinococcus radiodurans · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9RRR8
- Elsewhere: RCSB PDB 3Q9V · PDBe 3Q9V · UniProt Q9RRR8
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