MolNFT v1 · #76078 · protein
The structure of the dimeric E.COLI mind-ATP complex
3Q9L · Septum site-determining protein mind: “The structure of the dimeric E.COLI mind-ATP complex”. X-ray diffraction, 2 ligands (ATP, MG), 5 pockets (best druggability 0.87). MolNFT v1 #76078 on GenesisL1: 3D structure, binding sites and…
- PDB
- 3Q9L
- Type
- protein
- Length
- 514 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Septum site-determining protein mind
- UniProt
- P0AEZ3
- Ligands
- ATP, MG
- Pockets
- 5 · best druggability 0.87
Structure
x-ray diffraction · 1 distinct chain · 42% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Septum site-determining protein mind | protein | 257 | 42% helix, 17% strand | P0AEZ3 |
Ligands and binding sites
- ATP · Adenosine-5'-triphosphate · ligand · 2 copies · chains A, B
- MG · Magnesium ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 838 | 0.87 | 0.90 | 103 | MG, ATP |
| 2 | 116 | 0.54 | 0.83 | 24 | empty |
| 3 | 94 | 0.52 | 0.83 | 23 | empty |
| 4 | 58 | 0.34 | 0.78 | 12 | empty |
| 5 | 51 | 0.34 | 0.79 | 10 | empty |
Interfaces
1 interface between chains.
- A–B · 1832 Ų buried · 24 hydrogen bonds · protein-protein
Compared structures
- 3Q9L · The structure of the dimeric E.coli MinD-ATP complex · the same entry in another collection · chain A against A, TM-score 1.00
- P0AEZ3 · AlphaFold monomer V2.0 prediction for septum site-determining protein mind (P0AEZ3) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0AEZ3
- Elsewhere: RCSB PDB 3Q9L · PDBe 3Q9L · UniProt P0AEZ3
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.