MolNFT v1 · #75598 · protein

Structure of legionella fallonii degq (delta-PDZ2 variant)

3PV4: “Structure of legionella fallonii degq (delta-PDZ2 variant)”. X-ray diffraction, 1 ligand (CD), 1 pocket (best druggability 0.33). MolNFT v1 #75598 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 3PV4
Type: protein
Length: 281 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Degq
Ligands: CD
Pockets: 1 · best druggability 0.33

Structure

x-ray diffraction · 1 distinct chain · 15% helix, 39% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Degq	protein	281	15% helix, 39% strand	—

Ligands and binding sites

CD · Cadmium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	59	0.33	0.78	21	empty

Compared structures

3PV4 · Structure of Legionella fallonii DegQ (Delta-PDZ2 variant) · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 3PV4 · PDBe 3PV4

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