MolNFT v1 · #75388 · protein
Crystal structure of mbl collagen-like peptide
3PON: “Crystal structure of mbl collagen-like peptide”. X-ray diffraction, 2 ligands (ACE, NH2). MolNFT v1 #75388 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3PON
- Type
- protein
- Length
- 79 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Mbl collagen-like peptide
- Ligands
- ACE, NH2
Structure
x-ray diffraction · 2 distinct chains · 0% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Mbl collagen-like peptide | protein | 27 | 0% helix, 0% strand | — |
| C | Mbl collagen-like peptide | protein | 25 | 0% helix, 0% strand | — |
Ligands and binding sites
- ACE · Acetyl group · ligand · 3 copies · chains A, B, C
- NH2 · Amino group · ion · 2 copies · chains A, B, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
3 interfaces between chains.
- A–B · 865 Ų buried · 8 hydrogen bonds · protein-protein
- B–C · 836 Ų buried · 8 hydrogen bonds · protein-protein
- A–C · 798 Ų buried · 9 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 23 modified, 3 covalent (hydroxylation, covalent ligand).
Compared structures
- 3PON · Crystal structure of MBL collagen-like peptide · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 3PON · PDBe 3PON
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