MolNFT v1 · #75348 · protein
Crystal structure of D14C [3FE-4S] pyrococcus furiosus ferredoxin
3PNI: “Crystal structure of D14C [3FE-4S] pyrococcus furiosus ferredoxin”. X-ray diffraction, 2 ligands (F3S, CO), 1 pocket (best druggability 0.31). MolNFT v1 #75348 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3PNI
- Type
- protein
- Length
- 132 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ferredoxin
- UniProt
- P29603
- Ligands
- F3S, CO
- Pockets
- 1 · best druggability 0.31
Structure
x-ray diffraction · 1 distinct chain · 20% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Ferredoxin | protein | 66 | 20% helix, 26% strand | P29603 |
Ligands and binding sites
- F3S · FE3-S4 cluster · ligand · 2 copies · chains A, B
- CO · Cobalt (II) ion · metal · 4 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 64 | 0.31 | 0.75 | 16 | empty |
Interfaces
1 interface between chains.
- A–B · 345 Ų buried · 4 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P29603
- Elsewhere: RCSB PDB 3PNI · PDBe 3PNI · UniProt P29603
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